ABSTRACT

Emphasizing the search for patterns within and between biological sequences, trees, and graphs, Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R shows how combinatorial pattern matching algorithms can solve computational biology problems that arise in the analysis of genomic, transcriptomic, proteomic, metabolomic

chapter 1|20 pages

Introduction

chapter 2|22 pages

Sequences

chapter 3|10 pages

Simple Pattern Matching in Sequences

chapter 4|62 pages

General Pattern Matching in Sequences

chapter 5|22 pages

Trees

chapter 6|18 pages

Simple Pattern Matching in Trees

chapter 7|26 pages

General Pattern Matching in Trees

chapter 8|30 pages

Graphs

chapter 9|36 pages

Simple Pattern Matching in Graphs

chapter 10|28 pages

General Pattern Matching in Graphs